NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335016_0054245

Scaffold Ga0335016_0054245


Overview

Basic Information
Taxon OID3300034166 Open in IMG/M
Scaffold IDGa0335016_0054245 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3096
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001775Metagenome / Metatranscriptome636Y
F049637Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0335016_0054245_2274_2822F001775N/AMKNLLDDERIRIATISFLIGVLLTFVIFPRPESETVYKFETVTKTDTLFVDKLSTVYIPKTKIKTQVVRDTILIDFKPQISQFTASFPFEHGSTSISGEVLGEVLKMTATNDYKLPVVTNTITNTETKTIVQKPKGIYLGAGVNSLIQPSASVTYLDNKYIFSYQFHPLQKIHQIGVAKKLF
Ga0335016_0054245_57_251F049637GGAMNLLKSDELGVPSTFLAIFANVTAMAGLQMVNVVFTSVISILSIVYLVYKIRNEIKKLKDNGKV
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