NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335016_0024372

Scaffold Ga0335016_0024372


Overview

Basic Information
Taxon OID3300034166 Open in IMG/M
Scaffold IDGa0335016_0024372 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5023
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015723Metagenome / Metatranscriptome252Y
F033779Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0335016_0024372_2421_2843F033779N/AMNGLTNLRKLLSRPVTLTILTAAILAGVSGCRTAQPILESVIVRDTVIVTEPKYLIDTLEVMKDTVIYQDKVRLQLQYIDRKVVVEATCLPDTIRVTQTKVITKQEPKRRGWNFDQMVFGALVVLLILYFFKRWVDKLTE
Ga0335016_0024372_601_1038F015723N/AMAKIVSITPTGMWQDLHKLEIRFDNGDYGTAFAKSQTPSYAVGDEVEYTKNEKGTIKIQRPNNFGGGGSFGGSFSNASKSSGDDRSASIIRQVALKAAVEYACAAAHDVNTILANAETFNKWMTGQSAAPASHTEHFATRNESPF
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