Scaffold Ga0335016_0019627

Overview

Basic Information

• Taxon OID: 3300034166
• Scaffold ID: Ga0335016_0019627
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5700
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061575	Metagenome	131	Y
F100351	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335016_0019627_1873_2382	F100351	AGGAGG	MPLERFSMSMSLLERLSSGLSGSEMEKILTEMEKALSAGLSNPKTAALMGAYIHVIRERQNTVIHRDILLNIAATWIIREDENPAEINPDIHQQKLQTFEALSKGGAHDFFYSLGIEPLMPLFNISAEEFQTLWEYNTMQLLNLNEALRQLSSHRKAGLKGQQKDSESK
Ga0335016_0019627_996_1337	F061575	N/A	MSVCSPCFDSGISVAACNGGIQFGYVTPEESYTITLTHNATKRMQIFNAESDVDGLLIITGAKVDALQGYTISLAGCNKFTICEVEYDCISFIVVNMDIDEPQTINLLECLEC