Scaffold Ga0335016_0011956

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335016_0011956

Scaffold Ga0335016_0011956

Overview

Basic Information
Taxon OID	3300034166 Open in IMG/M
Scaffold ID	Ga0335016_0011956 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7554
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (93.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021733	Metagenome / Metatranscriptome	217	Y
F073254	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335016_0011956_3998_5239	F073254	AGTAG	MTAWTPDWSVEVNGRGDITNLVIANLTITSGRSDIYSQPIAGYCRFTILNLDQSSTNFDVNDSVVIKVKNSSGDYVPLFGGDVTDIDVTVQTGEPAITQAITVTALGALSKLPKTLTQGVLSKDFDGDQIYEILSTVLFDSWNEVPAALEWINYDPTTTWANAENSGLGEIDRPGDYELTARSAETTDIYSLVASLARSGLGYIYENSSGQIGYADSTHRNQYLTTNGYTFIDGGWAYAAGIATSRRLGDLRNEVTITYKNDAQETASDSGSIATYGYQAENILTSIENKADAESQAQFYLDIRAYPQDQFKSITFPLTNPDIPDASRDQAFNIFMGLPVDITDLPINIAGGRYQGFVEGWTWTSRFNALDLTLIVSPTAFSLQSVRWNGVSSLETWNSIDAELEWINATIVA
Ga0335016_0011956_7426_7554	F021733	N/A	TGAQFVFPIKPEFPTAGGAGTDAQTVDFTFKVSKGEVTETFS

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