NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335016_0002058

Scaffold Ga0335016_0002058


Overview

Basic Information
Taxon OID3300034166 Open in IMG/M
Scaffold IDGa0335016_0002058 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18606
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012040Metagenome / Metatranscriptome284N
F012111Metagenome283N
F082111Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0335016_0002058_17089_18606F012111AGGMSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNANFRQGFVSCRPGFVQKDYDLCVSITADNDQITADQTNVTADGWSEECYGPQSLTGTFQCALPYIADDGRTFILMLISGKVWLYNCLQNTAQNLSVSPSLENPSNLLDGWMVQAENFVVIQDGFSRPLIFNGTNLRRSSDDEIKTGKVMAYVNGRIWYALPDGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDTWKNLSYPIQAISLLTSGALGSRSAITINGDVFYRAVDGVRSFIIARRSFTDWGNTPISSEILNVIENDQTNLLWASSAVVFDNRLLMTCQPRYNAEGVIHKALAVLDFDLITSMRKKFPPAWSGIWTGLNLLQIVKTENAYGDQCFCIARGSDDSIQLWEVTKGDKFDNNIPDGKKEIEWMVQTRAYNFDVPFGLKRLDSGDLFVDSLEGDVSFNVTYRPDQYPG
Ga0335016_0002058_3229_4374F082111N/AMEEPLNSPVVSNNQTPEFGSSFIDAFKAIGADNTAPADKAATPAPQKTDNTPPKLSKSEMDIERMFGSKKAAAEPAAPAPDDADIPETIKSTKAADAFRKIKEEKAQLAKQIEELKAGKIPNANSEAQLKTLQEERDALSERVRLLDIERHPDFIKKYEGKITGVFDSVKNLVGTDGERLVSLLKSPDSDYRNSQIDDIVEGLSPSKKAKLGALIVKYDEINGERSSELNEAKADYDAVISKYKQDNEEGTKAALESANKTWQKVSTDARSLEIFEPRENDEEWNTELNGRLSLAQQIFNGENSEEDLAKAALWAAAAPKYRELLYAQVEVNKRLQAELTKYRGSEPGVTSKATSGGYRPANANTAKSEDFVASVMKSLGR
Ga0335016_0002058_4381_4713F012040N/AMNWLRGLTKNPSKQAKQDLLNLPEVNISAWQDEGQQAELAAIMRNPIIRMAIRIVSESIPVPMPSHGSKESDIIFAAGVTAGYAHCLENLRKLAVFETAKEPEATFDKQY

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