Scaffold Ga0335016_0001672

Overview

Basic Information

• Taxon OID: 3300034166
• Scaffold ID: Ga0335016_0001672
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20716
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (37.14%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008495	Metagenome / Metatranscriptome	332	N
F018136	Metagenome / Metatranscriptome	236	N
F020694	Metagenome / Metatranscriptome	222	N
F023103	Metagenome	211	N
F025459	Metagenome	201	N
F034182	Metagenome / Metatranscriptome	175	Y
F044972	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335016_0001672_10271_11071	F023103	GAGG	MAKFKFESVKFEQIMKDYAEIREVTIPDAVSLNARLLCVELARRTQPFGDKQESGTIRVKNDIGKIIKNTEQLDEYADRVESQRIKARLKALIKSGRFDIVETILRNIGFLNKWTGMEVISASKIKSVHNEARNKTTGRTKSRGSKLFIASVSEQDTYISEVQKRVGISKGGWADCATQLKKVNKGGLLAGFPTWVKKAMRSGSGKVQDMTSDIKNPRVFLTNNVPWASNVIPESEQDNATAVVVVKMRNQMNQILKKRQKTLVET
Ga0335016_0001672_12147_12512	F044972	N/A	MPATVITSTVASGVEFGLLQETGLLLNSFSRSVQSDKATVMDALGDTVAVAYFNKTATITLDGVINGGVNYELANILTLANDTDSYGVSGGSVIVDSVAETTGAGTFKTINVSATQYPEI
Ga0335016_0001672_12530_12976	F018136	GGA	MITDSTYTLTLEKALTDTFVLALQQEMQSALVVTAAENFGTMTLPACFVKCTRQRESIIDSAIFQFAVDIALIVQADDMDQMAMENLWSQVLCISHDITGLKTKLNAVRPQYAFVFGILRDGPVSLSSNERHFERSVTITVHAALFAS
Ga0335016_0001672_15092_15394	F020694	N/A	MLDIFTNDLAAMLDDLPLAVTFGERNFLANRTTYRRDNSLADGGFMDSASMTITAVYDSFVQTISLGDVLVIGGRRFRVTSAELSQDAVSVDFSLEDINK
Ga0335016_0001672_15416_16027	F008495	GGAG	LPIAKHFADQGHNVTFECLPDYHGLFAMVDYCQPIYPQNDHSGFDRIINLQIWPDRHEHFCASPLSWSDYVYGLFPEGKDIDRQIVLNSPAIVTPPELRSWVLCFPTGYSQDKKIDPRDVITAAHQIANGRPVVCAGKAAHGMAEFETIEYMCAYIRDANDVVTINTSTSILASALRKSWVHIADSPKHDFTHPNQRRVERKF
Ga0335016_0001672_3332_3556	F025459	AGGA	MKLTLEFDETERYEHEVACKGLDILILLDDIDQELRSALKHECGEFAKLDVETMESVRAWIWEQRSKRNIPELT
Ga0335016_0001672_4593_4760	F034182	AGGCGG	MDNHAFHTFIGTSAPAMAVLISFSEVEAWLRIFSLVLGICIGAVSLYKMLKSKKP