Scaffold Ga0335016_0001410

Overview

Basic Information

• Taxon OID: 3300034166
• Scaffold ID: Ga0335016_0001410
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22767
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (65.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022156	Metagenome / Metatranscriptome	215	Y
F034115	Metagenome / Metatranscriptome	175	Y
F065554	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335016_0001410_11879_12082	F065554	AGGGGG	MIGTVTIGDTPVDVYGTECSAEPDVGIMGNYVEIEDLEVGGISIYEMVANNPIFDQIQEAINDMVNS
Ga0335016_0001410_13694_13861	F022156	AGGA	MPNEIEKEIVKEAIKEWLNEKVTQFGWFSIRTLFYVFVAGLGYAYLTTHGWSLPK
Ga0335016_0001410_6806_6973	F034115	AGG	MRGFAEVFLDLTRTIKRVHELKLKNEHTEAYLLSCDITDYAQELEDVLQKDANIQ