Scaffold Ga0335016_0000420

Overview

Basic Information

• Taxon OID: 3300034166
• Scaffold ID: Ga0335016_0000420
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40634
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (90.48%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029387	Metagenome / Metatranscriptome	188	Y
F078413	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335016_0000420_344_982	F078413	GGA	MDAVQSTRWSDSFIQTVLNAVYDAEWSNILNAAPYYRFAQRNVTTDANGQVALTALDSGGGDSQQLLYRVMSVSDGNILYTETRFQDVPLATTTNYLPVYDRLYYLTGTYLQALPVAFGVGLYIGINYKPTALSDLASDASVLDWPPNSHLVLVYQGAYQLLLKGGAEAQSASYLKKLAEEERATMLDDLRRQTINPTRLAYPDQKWDWSGG
Ga0335016_0000420_39252_40610	F029387	N/A	VLSAHAIANGYTWRRDSGSVDILVVGNGVLYTTTFGAFPWTYTARTGALSTTVTPTFAKFIDGAGADVIYIGDGGLLNKWNGTTLTVDIAGTIGATMLAVHNQRLYSCGCSAAPDSIFYSALNNGDTLGNGALDGGQIVVRTFGDENVVGLASINTSLLIFHRRGISRLTGFGQDDITVAPQAVSADVGLIAPKSIVANDNVAYFVSERGLYRCNEAEVAAVGTAQTPDPLLPIVRSLSAAQFDLVRSVFNRGTKELWVTMPGFGCYVYHTVLQAWAGPWDTGFVDPDATTLFETLNTAGLPVILKGDASGWVSLCDAPDVFRDNVAAAGTGGERYAMSVQAHRLYFGDEALAKSLRWAYLTAQLKGSDQTRVEWNTGDSFGSFTLPPSTDESWGGAGTVWGTGTWGGAGSQNYRIPLGGTGYYVDFSIIDSGDALPVFSRLQSEAFSLGRR