NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335016_0000249

Scaffold Ga0335016_0000249


Overview

Basic Information
Taxon OID3300034166 Open in IMG/M
Scaffold IDGa0335016_0000249 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53374
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (41.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004694Metagenome / Metatranscriptome427Y
F038647Metagenome / Metatranscriptome165Y
F100729Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0335016_0000249_32230_32475F100729N/AVNWKALVEAQNKKTYVLPQGWDSRDKVAEQLECSVDNVRVLLGPAIRNKTVEVQQFPVWDDVTKKVIRITAYRRRITDAKK
Ga0335016_0000249_52679_53008F038647N/AMQTNITPVAVYPGEANTLYIRSIALGTPPQYYYELQNVVVVPPVAEQIDPTTGAVLIAAAPEQNIVTVLKNGNVNMTEEQWDNWAAGPITEDEPYQLDCIATNLGLTRA
Ga0335016_0000249_53012_53266F004694N/AMNTVIAISPVSVWTPAGTKSATQFNVRYVNYQNGPAVADCQLLDAAGAEVASQLVNATEAQTAAWTSDAAFYAVLAQNAGLTPL
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