Scaffold Ga0370515_0039371

Overview

Basic Information

• Taxon OID: 3300034163
• Scaffold ID: Ga0370515_0039371
• Source Dataset Name: Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2113
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 64.9123
  • Long. (^o): -147.839
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005822	Metagenome / Metatranscriptome	389	Y
F011771	Metagenome / Metatranscriptome	287	Y
F014867	Metagenome	259	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370515_0039371_1190_1726	F014867	GAGG	MRTFFPSTYDRADVLMSAGCSTFVSAALILVIPRFGILLLEILLGLFFIGCALMARKRLRTQALRQDSSDKSKEARTRRFDRYDVLMILAVVVVQTSTAGLLRKAGLAEGTVGILPLFLFAAGILLKPRAVEFIEGRRKTKQAGRNSNNLPSVAAQASASEAGTKTVVHAATKNGDLE
Ga0370515_0039371_1723_2112	F005822	GGAG	MKVSEQPTAVNGAESTADSKITPPPAGEGRRSRAVTDSKPTLPRNTATRRRRNRQDNSETSGEERFFLASGSSDGAVPALGRECGSEAEAIIDAFRERVNFYRLSEFQTRADVGPSGEPVLRKDGLKKNN
Ga0370515_0039371_901_1176	F011771	N/A	MIDSKPGPKGENATASRPTRFGGLDQVDWLMIAISVLLGTVAKQHHFLDLSDQFLEWVLPFLLMVAGYRTRRKVTELIESWRAKAKSPSSE