Scaffold Ga0370515_0000387

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0370515_0000387

Scaffold Ga0370515_0000387

Overview

Basic Information
Taxon OID	3300034163 Open in IMG/M
Scaffold ID	Ga0370515_0000387 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	19769
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	64.9123	Long. (^o)	-147.839	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045232	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370515_0000387_14317_14607	F045232	GGA	VSNLFKLVERIAIATLTAAAIVYAADYGVFQHKMSTNGGAAALGSVTSYYGTALKNGKMVIFTDQPLTETCAHSLFPHSGYRPCWYAGRDNVKPIG

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