NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364935_0322486

Scaffold Ga0364935_0322486


Overview

Basic Information
Taxon OID3300034151 Open in IMG/M
Scaffold IDGa0364935_0322486 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 2_s17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)512
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032400Metagenome180Y
F095549Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0364935_0322486_253_444F095549N/AVVLIAETTMLTSSFAFAPLIPRGGPYFATPTPRVDIGQRPSVLARPPHMSQQLSLFGPPGGRR
Ga0364935_0322486_29_262F032400N/AMTSSRRSFRSAPPRRPAGPRCHGGASSLLRLGFGAVPQRVAAARTSGWGELANSAGADVEHVVGLPVRDRRPAPLWS
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