Scaffold Ga0334963_000412

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334963_000412

Scaffold Ga0334963_000412

Overview

Basic Information
Taxon OID	3300034145 Open in IMG/M
Scaffold ID	Ga0334963_000412 Open in IMG/M
Source Dataset Name	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 59SNS
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16639
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.3778	Long. (^o)	-117.6098	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040840	Metagenome / Metatranscriptome	161	Y
F055604	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334963_000412_10219_10404	F040840	AGGAGG	LITKTENLIPVQLSQVNEVETARPAAASADKKTFVEPEVSFPIDVLEATTFFQLTDSGAT
Ga0334963_000412_1322_1477	F055604	GAGG	LYVRLLAAALFVVWLVGKFVMGREGFVHIFLLCAVAIAVVRLVHERRAARQ

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