Scaffold Ga0334963_000317

Overview

Basic Information

• Taxon OID: 3300034145
• Scaffold ID: Ga0334963_000317
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 59SNS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20352
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079676	Metagenome / Metatranscriptome	115	Y
F081092	Metagenome / Metatranscriptome	114	Y
F091480	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334963_000317_10274_10498	F079676	GGAG	MPGETADPGARIKAGDLVRALDGAYKGSVGTALRVVTSRDEGRTSQSTILVSFPAGGADYLDAGALEKAETADD
Ga0334963_000317_9186_9428	F091480	AGG	MRDLHVYVEPVGSAPRGEWKAFYSRRADGPYYRWLYAEGQDHWHYSRVSLDRPTLRMLCVAPWDAVPATLRSRLGEHYLE
Ga0334963_000317_9914_10075	F081092	AGGCGG	LSGYDDFIERLEAALADDEGREDFLNYMEGLTSEGRAEILAEADRREGEAEVT