Scaffold Ga0334963_000206

Overview

Basic Information

• Taxon OID: 3300034145
• Scaffold ID: Ga0334963_000206
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 59SNS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29841
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (48.28%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004903	Metagenome / Metatranscriptome	419	Y
F006090	Metagenome	382	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334963_000206_2699_2917	F004903	GAG	MARYLQKISLRPYSDAEIWTGWELENRAGELEGLILADGMTQEELVAKYGVTEFQKIPGEYLGVREFRSKQE
Ga0334963_000206_3633_4265	F006090	N/A	MSLLMQHKAPPTAPRLDGKEVLHAFDPSQAKVKGVMFGGRKAFLLETLGEEGFNAFTAKLTPRTKAYVKTPLASSWCEFESLIELDRAIYNELKARYPHVLALIGAASAELGIGRIYKSLDSESLVQFLESNAMFHDQYQKFGSVQFEKTPSGARMIYSNYPVHSPIFCASAVGYFLESILRHGGTDPSVTETKCQCHGDKTCTFEMKWR