Scaffold Ga0334963_000106

Overview

Basic Information

• Taxon OID: 3300034145
• Scaffold ID: Ga0334963_000106
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 59SNS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56037
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (42.59%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002279	Metagenome	575	Y
F026702	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334963_000106_30563_30739	F026702	AGAAGG	MNFDVATIHFPDGRVAKLPPNEFYALPLGERIELLTSSRIKFQKDNQPVSPLIALKKS
Ga0334963_000106_40409_40801	F002279	N/A	MSPPKQDWPRLVGESLRQNGPWHTYQKLLEARRVYGDDLSLRGYVEIVRNTIVRNFLEHPRGVQAVPKLSADFLTNFDRFDLNAQEGYLVSLIDGRMDVQKLMILSPFDPFTTIFILAKLQHERAITVPS