Scaffold Ga0334963_000032

Overview

Basic Information

• Taxon OID: 3300034145
• Scaffold ID: Ga0334963_000032
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 59SNS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 118437
• Total Scaffold Genes: 126
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (54.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001519	Metagenome / Metatranscriptome	679	Y
F004033	Metagenome / Metatranscriptome	456	Y
F020065	Metagenome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334963_000032_102485_102658	F020065	GAGG	MKKSQIQQIKEGRAMREKTWSGRLQPFGPHVTLKTENAVKLTTVPSSSKEKYNGGNE
Ga0334963_000032_112395_112856	F004033	AGG	MKKFVCGFALLMFAFAGLAADRTTTPEITPPDNGDQWLRLSSTEKLFWAIGYSQGYREALDKIDVTAGPTSPCASLAVRTERQSSTAGKLSGFELVSGLERFYSDPANTVIPVGSAIRIYLLQASGKDQTTIQELIDTARTLGLQAAARPRAQ
Ga0334963_000032_57403_57696	F001519	GGAG	MTLVNSLCAEISVFQGVGESTGVFVERSAIRGKKGLCKSMRDLAIKSRVLGDGYYYIPVDLWPKAKEPIVVHKHDWTVISSIPRTSRAVKKRRIAAE