Scaffold Ga0334963_000015

Overview

Basic Information

• Taxon OID: 3300034145
• Scaffold ID: Ga0334963_000015
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 59SNS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 219807
• Total Scaffold Genes: 183
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 96 (52.46%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039817	Metagenome	163	Y
F041799	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334963_000015_197904_198470	F041799	GGAG	MVDESVTVKGSPVRSLQRFIDAELTPEQRETVLRSLPPEYATRFRTPVLATEVVPVHMLNRFTEEAAKAKGEAVDTFARRAGREAAGDAVKGIYRFFALVMTPPALLGKASQLWSSLYNRGELRVDEQGERNARIRLLNFPSELAGCSRVTGWIERMAELTGVKNIKVEQTQCYAKGGPYCEWTLRWS
Ga0334963_000015_94924_95118	F039817	AGTAG	MHDDPPPRALPERTGKHFCIRCLAAVPAEEFLRNDHICDKCAASPEYPEPEPIKQHDPPRRRRS