Scaffold Ga0334963_000013

Overview

Basic Information

• Taxon OID: 3300034145
• Scaffold ID: Ga0334963_000013
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 59SNS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 244790
• Total Scaffold Genes: 230
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 121 (52.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010196	Metagenome / Metatranscriptome	307	Y
F069314	Metagenome	124	Y
F094358	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334963_000013_138369_138620	F069314	N/A	VSATGRRVEFLARAIVNRLEDRGVVEFVDAEAGILVVTRTLTENFTAVEQLERVARGKLGKRATEQQVENEMRRLAAERAIIL
Ga0334963_000013_14060_14296	F010196	N/A	VSGIRLVLGVIVMGIAIPVTLFFLLGLQTVSQLLTIAATTFTAWGVCDFLATLLERPRLHDRTPGNAIREDLERRAKD
Ga0334963_000013_31106_31468	F094358	N/A	MLDLDGLQVAYLGVALAHYLDLETGDIIDLPLDAEAPGDPSRYLRIPARSEESEAEDRRLFLDKVKVAAVRERLSGVVDDPAAFRQVLHEDRLVERSFFNFKNDRATKAIEEWLASEGIE