NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334962_003607

Scaffold Ga0334962_003607


Overview

Basic Information
Taxon OID3300034144 Open in IMG/M
Scaffold IDGa0334962_003607 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 58SNS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1709
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010645Metagenome / Metatranscriptome301Y
F016251Metagenome / Metatranscriptome248Y

Sequences

Protein IDFamilyRBSSequence
Ga0334962_003607_1_324F016251N/ARPEGDPLDGREEALGRILEEEAGKGRTVWASFNWALQVDLNTVLEQQERLNELVDTRQLVVKTAALEEAIDEWPAAALRRAQSSHSGTILASQSGLSLSRATPMPAS
Ga0334962_003607_1444_1677F010645GAGMGGMHDWWIVELARERNAQMLAEAEVRRLVVGASDRTSPLARARARAARKLFEFAVTLEREETWRAVWERLEAPRHP

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