Scaffold Ga0334958_025687

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334958_025687

Scaffold Ga0334958_025687

Overview

Basic Information
Taxon OID	3300034141 Open in IMG/M
Scaffold ID	Ga0334958_025687 Open in IMG/M
Source Dataset Name	Biocrust microbial communities from Mojave Desert, California, United States - 54SNC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1280
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.3778	Long. (^o)	-117.6098	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001042	Metagenome / Metatranscriptome	794	Y
F038520	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334958_025687_1_366	F001042	N/A	EGNFSSHFLKDSEAEADDKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAQDSISNKNDAARRDFTEKSSLLLESYREDVPKLLGKAESCLGEAIDLINLIVSASEAEVNN
Ga0334958_025687_786_1088	F038520	N/A	MKYPKIKHGGSRAGAGRPHKYQAGETKLVRIPVAYVDKILRVVSYMDANDGQLPPDIAFATEGEDFSCPGYDASRELPYPDFDGYNKRHRNSTFGKNFHK

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