Scaffold Ga0334957_003306

Overview

Basic Information

• Taxon OID: 3300034140
• Scaffold ID: Ga0334957_003306
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 53SNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3963
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068443	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334957_003306_3134_3919	F068443	GGAG	LRATRRRQRRVDPLASPGAVRSVLGSLRAALPDLIPHEDKELVSLLRAARHARRYPATDTRRGRPGRWGREELLQVAARLDDIIGRETTSHVSFASFVDHYLRLLDFPADVVGALEGGEINLFEAEQLARVTARRLGVTSGRAKRTRAELLSSHLQTKASGSGLRQRVDELLRAPVTEAGEAAGSQSAPELEDLEDFDPYDPTHLFWEQLKQLGFAFRDIRREDVADEEVEELLKASEPILTILNRIQRRRAQAKVIKVKL