Scaffold Ga0334957_001939

Overview

Basic Information

• Taxon OID: 3300034140
• Scaffold ID: Ga0334957_001939
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 53SNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5774
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001042	Metagenome / Metatranscriptome	794	Y
F096282	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334957_001939_2601_2828	F096282	N/A	MRFEHRGWIIELFLVGIHHPNYPYKVWEQATAIWKVVIDGRENSGTRTGDREKVLADIKAFIDWHIDDPDMKNIF
Ga0334957_001939_4174_4551	F001042	GGAG	MTLTEDCPDGRSQDLTCAEADSKIVIDKMLVNKLTELLITSIYSVHTSRRCEIFLTSLDMHLAQYSISNKNDTAHREFSEKSSLLLESYQEDVPKSLGKAESCLGEALDLINLIVSASEAGVNNG