Scaffold Ga0334956_000154

Overview

Basic Information

• Taxon OID: 3300034139
• Scaffold ID: Ga0334956_000154
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 52SNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30511
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (29.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002548	Metagenome / Metatranscriptome	549	Y
F008640	Metagenome	330	Y
F092677	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334956_000154_10695_10997	F002548	N/A	MPKFEYEQTEEVRSAFFERRRIRRIRMIVELTLNLISSDRTSSHREARSLVECARKAILELYPGFENRYELIIQPHFERVLQQRWPGEELCHFSLNEVVN
Ga0334956_000154_15103_15564	F008640	AGGAG	MSNLTAEKIRRIFLSPRPHLALLTAADLLGTTLKELKRDIDDRVIVAASTALGVRITREEMIAAAIRLWDQTVIEDALGDDAAAVLPEAIRLVLLRVRVPRYQRDMLVALAQRHGTSIDAIVTRELEDVACAHAEELADAVPSLAIGLGLGTA
Ga0334956_000154_8639_9247	F092677	N/A	MRTFPFVFALVTALALGCGGNADGPDHQAEWRNVLQHKKAALAPDATTKQKQVYADSVAAFVQRYPDHGRAREVFRRMQVEFADELASVGRYQDSIRFYRAVLEHDPHNQDAMRGLRDAVERLAVSREKLVQLEKGMSHREVAAILGKPMPGWTAKNKRRGATIEAWYYRTRTGGVAGVYFRDGKVFAAEENSHAKMSRLGS