NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334956_000052

Scaffold Ga0334956_000052


Overview

Basic Information
Taxon OID3300034139 Open in IMG/M
Scaffold IDGa0334956_000052 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 52SNC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53865
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (48.98%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013963Metagenome / Metatranscriptome267Y
F092687Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0334956_000052_41768_41944F092687AGGAGGMAKDRNNTGGPSQSPKDKPTDDRDNRKAQSRDELKERSVSGDRPGDGRRNGSDKAPRG
Ga0334956_000052_49926_50165F013963GGAGMNYDLAMMALDGLARSPITVRHENGAMIVEGEAAGFKELARLFLLLGGAQSAAETFELQPGVHSTNGSPLTKLVLLPPR

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