NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334929_001594

Scaffold Ga0334929_001594


Overview

Basic Information
Taxon OID3300034135 Open in IMG/M
Scaffold IDGa0334929_001594 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 25HNC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6393
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001042Metagenome / Metatranscriptome794Y
F007252Metagenome / Metatranscriptome354Y

Sequences

Protein IDFamilyRBSSequence
Ga0334929_001594_1572_2012F007252AGTAGMNNKVHPFFEAVTLWDFNMKKSKGKSKCGRGGARPGAGGVCRWKHGRTKLVRLPVALLDKILEVARYMDQNEGRLPPCALPVITSGHLSESLSGEELKEFLAKKKARKLAEKVMCGDERVVVSDKTFAAFDIFEVPPAQKARSSSR
Ga0334929_001594_841_1227F001042AGGCGGMTISHLIGENFASDFPKDSEAEADDKIVIDKLLVNKLSELLITSIYSVHTSRRSEIFLTSLDMHLADFSISNKNDTACREFTEKSSLLLESYQKDVPKSLGKAESCLGEAIDLINLIVSASEAEINNG
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