Scaffold Ga0334929_000157

Overview

Basic Information

• Taxon OID: 3300034135
• Scaffold ID: Ga0334929_000157
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 25HNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31141
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (77.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020517	Metagenome	223	Y
F044992	Metagenome	153	Y
F079676	Metagenome / Metatranscriptome	115	Y
F081092	Metagenome / Metatranscriptome	114	Y
F091480	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334929_000157_27881_28099	F044992	AGGGGG	MNREVGSYSEDNVGASRFEGDDVGLPESPIYSNYPRHLWRTHARHGLVQSPGRSSENSNGHRPSPDVRPPGE
Ga0334929_000157_29077_29319	F091480	AGG	MRDLRVYVDPVAPGARGARKAFYSRRADGPYYLWFYAEGSGRWRYSRVNLDRLTLRVLCVAPWDAVPNALQDRLGEHYLD
Ga0334929_000157_29358_29588	F020517	AGG	LSGPRLVSRDVKHYLVKRPNEILSKRLSWNEVQEELRLKGTGADEAMLFRGVVTEDGTEYRDMYADSRTQVTEHAG
Ga0334929_000157_29802_29963	F081092	GGCGG	LNCYEDFIERLESALSDEEAREDFLEYLQGLTCEGRTEILAEADRREAEADVA
Ga0334929_000157_30158_30388	F079676	GAG	MAIEAVEPGGRISAGDNVRALEGKFKGKVGTALRVVTSSDEGRTSESVLVSFPAGGADYLDAGELEKAEPDQAEDA