NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334915_146935

Scaffold Ga0334915_146935


Overview

Basic Information
Taxon OID3300034132 Open in IMG/M
Scaffold IDGa0334915_146935 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 11HMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)503
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004218Metagenome / Metatranscriptome448Y
F025220Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0334915_146935_396_503F025220N/ALGAASVVLGTAAIFFMAAASTGLIPGVTPPGHGYN
Ga0334915_146935_78_296F004218N/AMVSPSSLLARAKKAAYANGATLLGNERSGRFSHEMAEGEYHMVGQRVIVTVTDKHWLLPWAVVEAQLGEFVL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.