Scaffold Ga0334915_038198

Overview

Basic Information

• Taxon OID: 3300034132
• Scaffold ID: Ga0334915_038198
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 11HMC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 958
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003339	Metagenome / Metatranscriptome	493	Y
F018165	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334915_038198_323_601	F018165	AGGAG	VSEDRSVEEMANEVLMRQAKARADRSGEPIQEALAAVLKTEAGTQLRELRDGPHSEESVEEAQIGMARERAQERAEDLGKRLGEAPGHPAHG
Ga0334915_038198_4_225	F003339	N/A	MYWYNPTTHSSERVAAPSNDSQAIQMLAGTQDSAEFIEEYCKLRRSGTPIEQALVLVGHEFRLRQPEYQLVLR