Scaffold Ga0334911_002525

Overview

Basic Information

• Taxon OID: 3300034131
• Scaffold ID: Ga0334911_002525
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 7HMS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2289
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005789	Metagenome / Metatranscriptome	390	Y
F032367	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334911_002525_1086_1277	F032367	N/A	MTRKRDIKQFRQACKEVGLTPRERFQASEALHAEKKARGARGHMSYGELLAWLREWKRRQWHQ
Ga0334911_002525_1298_1675	F005789	N/A	MKVLRAMRGAIVDARVAYPQVLHLEIRGKAGGSWRLATQDADWTPADPDALLGRSIEAAEIDEEAGMLRCELSDGSVLELKPGSGEAAADPPSWELITPDGLLLEFGPGVRWRISSADALPVSAD