NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334911_000904

Scaffold Ga0334911_000904


Overview

Basic Information
Taxon OID3300034131 Open in IMG/M
Scaffold IDGa0334911_000904 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 7HMS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3335
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002548Metagenome / Metatranscriptome549Y
F068035Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0334911_000904_2721_3023F002548GAGMPKFETEPLPESRSAFFERRRLRRIRMIVELTLNLISSDRTVSHREARSLVQCARKAILELYPGFEERFERVICPVFQRVLNERWPEEELMCVNPGEMIN
Ga0334911_000904_3078_3335F068035N/AIGKGSIATMLGTAAVEGGVLAEKIGARFMRDRLTKMIPLVGMVSGGALNYVSVHAVARNAIRYYEARVDPRLADEIWDEGDREHA

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