Scaffold Ga0370490_0001870

Overview

Basic Information

• Taxon OID: 3300034128
• Scaffold ID: Ga0370490_0001870
• Source Dataset Name: Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8794
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 64.9144
  • Long. (^o): -147.8354
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077460	Metagenome / Metatranscriptome	117	Y
F094847	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370490_0001870_4424_4789	F094847	GAG	MQKNFNVIFSSSDKKAARDGILFPLTAVDSAYATGPIRYVTTKLLEKLGYLGPNAFGGLSISPQVSELFSAALEIFKKGEQTEQGDYPYVGDVESPTGTHTVWISPNSTRGKHTLYLPEE
Ga0370490_0001870_5351_5593	F077460	GGA	MSVVVRPIGLLKAFCRDRLDEQDRIVLPDRDGRTLEAVCQDIGLPAGLVSLFIVNGHTQERFYHLQSGDDVKCVAIIGGG