NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370484_0000005

Scaffold Ga0370484_0000005


Overview

Basic Information
Taxon OID3300034125 Open in IMG/M
Scaffold IDGa0370484_0000005 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)318289
Total Scaffold Genes294 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)187 (63.61%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9095Long. (o)-147.9448Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011026Metagenome296Y
F074085Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0370484_0000005_160254_161018F011026GGAGMAKDYLLRRKNGVKPPSRLRYAAVPALILTIFLLAGLWVDVPAQESNAARGRRVSNVPAAEATVTVNEQFLNSFLAAIFDNLQEPSMPLTIGGASSPGTQGPSAQCASEIRLKREVEGVRTAVHFENGRIVGPLAFAGAYSSSILGCIEFSGWADSEVNLEFNSDHRALVARFHLREIHLNNVPAIANGPLLNMVQTAIDRRYNPVDLFTLEQLSTTVNIQPAKGALKLRAKEIRPELTPSALTLHITYEFVKG
Ga0370484_0000005_242569_243237F074085N/AMLKTNMKALYHRQDLLLIAFILACATVNHAQSGRRSTDGTTTTAPSVSGPKTVEKKPDKPPKLQLLVGIDNRDPKSNIPYYVSDTVIDNCVRRLGDAADVIVTSAGRGMSRSDAIKRAKEETVRFVVWLQIGSELADSGKQPSKNSVDELYVSYTILEPGTAKFKQSGRSHHQIYQTGRGGVSSPTSSRNNPTYSEYALKQAARETAERVLAAFEIKLRDDP
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