Scaffold Ga0370484_0000001

Overview

Basic Information

• Taxon OID: 3300034125
• Scaffold ID: Ga0370484_0000001
• Source Dataset Name: Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1369894
• Total Scaffold Genes: 1242
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 719 (57.89%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 64.9095
  • Long. (^o): -147.9448
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002175	Metagenome / Metatranscriptome	587	Y
F024393	Metagenome / Metatranscriptome	206	Y
F050694	Metagenome / Metatranscriptome	145	Y
F067593	Metagenome / Metatranscriptome	125	Y
F068684	Metagenome	124	Y
F096991	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370484_0000001_1197584_1198747	F068684	GAG	MHTLARYRIVIVIISCVLFGVLIAACTRQPSPVGPKFRGRLLLLAGETTNGADLFELSAAPTGSTYNYSIVTTGVFEAAASPDRTRLLYTTKDGILLRDLRTGGVKPLVKGENYCLAWSPDGNRFSYKQKSSAQEKAPGSAAGAPTKLYVSDLDGKAKLIWEDLFASYGTVSPPGQSSVLERAADPSGCSQWIAPDRFIFDRFLGALPKQKKGGEVLKPNTTTLVILSDPVKLVDTDRKWSIESVCQVGTAALVRPHDQNQPILIAKSLDHLETLNPSPACSGCRFVGFAAHSCVPFFIEEITATNSELFSLNPFSWQRQRGTRLSQTFSVAATMLINSSARLMILGDVPASLLLIDTETGETVPFFAKSAQPPGLLFPRPVVWIEN
Ga0370484_0000001_1264842_1266686	F096991	N/A	VPANLPQSTRQILKRRSFLALFPGALAGAAFLPLFDFHPKILAQSPDNKDKKAGNLLCWLDVCAPFIVEDAESGLHSEIVLTSDTFVGAKGYADGADATEYEIYLYDADGKAVGAEGVAKRLVVPAMQMTVLSLREILGDSRKFWGGMRIRLRPKGRQPMHASDLFSSAFVRWKTESSFDNVHANPDPLQWQRADTFFYSMPFPPLAEYESVFSLFNPYAERSLGAITLYDQLGLKLREVPYELKPRSSLLFDLRQGDFVSDPRRAFGETSLRNHSGAKLLNPGGGTIAITNQQGSVKGFGYLLIKRTGTSRFSVEHPIHQAPFKPVRAPAPFDAAGRFKAKNILYTPLVFRSKRIGGVTLESRFHFSSGAPLEEFLWLNPFITDTEGNVAWQATAETKLPATISANQIERGVIKLGGMQSCMLDCAQLPLPKTFSGGLSLAVAPMTNHTLMKIETSVKEWGAHAFTHFRPGLKSARGYQASPPRGGLATDYIASGARVERNGNRMVRDEVIGVMNIDDKGISGRPTLEIFTSSGLLTRIDLGDVPGFACRHYLLSELSSGKIGPHDLSLRLVDERATLLMSVVHLDYVRRDLAQDHGSDRFSTFNDYSCDASV
Ga0370484_0000001_17397_18254	F024393	AGGAG	MSINESSATALVRFTGLGIVCFNKERQRGEVAVIRDDKHDLSIKIQRPVFQEGGGNDVVVYQDIATYQSLPKEDVQIEIKALGKPAIDGFEIYQSGDFDRLGSADANDFRWIVNMNTLHGETALTPGTEERYPLTKIYIGNGLFYTHKLDTNLFFEKVGKDASGSATQSEVFGNVGETIGVKIEGEEVSFTIRIGGQEETQSLKRVDGLPFRIEITNMDYNADAVYSDMPDYYKYLSSADGRHFELSPIVEDAGAATAVGRPVNTMDFCHPIVVDDPPSIDQLGG
Ga0370484_0000001_834307_834573	F067593	AGGAG	MKLIQTNGSLQPGSRADRRILIDGLTLIALGLSVLFLNSWHNLFVRTAIGLFWGTFFLISNWSGLVQTLRGLRQKNDIQRRSSYRSST
Ga0370484_0000001_987863_988201	F050694	N/A	MKTMDFLLTFNNDAALVGNLEGKVRTEKRPMHLSSQDWQVGLSNNYLEPEHGYNEEGMPFQNMTGDFRFENGQVKVVRLEGVKPYETFADAGSGLSVRAVFLSHLNQWAVTE
Ga0370484_0000001_993528_993818	F002175	AGGAG	MAILTSTAGADDKVSVYDVPDSVLSQYAVTGDKAAQMFPEAGKTAGAEISKAGANKVKVENAESLGEVQAYGDICVCRELLCNAYGCWWHYYYCYC