Scaffold Ga0370483_0000566

Overview

Basic Information

• Taxon OID: 3300034124
• Scaffold ID: Ga0370483_0000566
• Source Dataset Name: Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10529
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 64.9123
  • Long. (^o): -147.839
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025985	Metagenome / Metatranscriptome	199	Y
F038514	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370483_0000566_5904_6176	F025985	AGGA	MDHRIPLLILASAFQATDLLGWLFTLGLAGSVWQGIKHAQRAYRAQDKQDKLEEAAWAIGIPAISAGVYWFSIRIGIINPVWTLGTLPAW
Ga0370483_0000566_6196_6663	F038514	AGG	MQQESEEPQLPYTPSNTGRRARVGYLGFDGVGFNDLWPLFVGTILSIALALEFFLGDGAGGSRWLAKTIFAALPFCAGFGYLRLLVVGRPPHFKGDLWATVLDLRLDFTDPPLRRFPLLPRVVVYAAAATGPGRAADLRHPMAVPPSSPRGAAAG