NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335060_0601514

Scaffold Ga0335060_0601514


Overview

Basic Information
Taxon OID3300034122 Open in IMG/M
Scaffold IDGa0335060_0601514 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)553
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022633Metagenome213N
F067661Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0335060_0601514_1_261F067661N/ATFRKYAFPNEATFTALPVPQGFGVPLGEIEGAYCVDILWDAEPHSDYLPFECWPPPVGVHTFLGWDEQYGKDYTERDDLNNTLNED
Ga0335060_0601514_264_551F022633N/AMIDFLKSIGINLGLTIAGFFGALLLAPKMKNWKMQLIAVLSGTLSATYIAPVIIGILNIKAPNIEYGLAFIVGFSGVKITEVLEVRILKLLKKPTK
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