NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335060_0143750

Scaffold Ga0335060_0143750


Overview

Basic Information
Taxon OID3300034122 Open in IMG/M
Scaffold IDGa0335060_0143750 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1397
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007690Metagenome346Y
F038234Metagenome166Y
F062757Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0335060_0143750_358_693F062757N/AMLHIQNIRKLGGRRLFGGWIITAVGGNPNEPHYLLDINCNGPIGNRIDGCMISLNRIGIVQRTMGRPDVLSYFLYYNGERTDVCVTKDWILNPENFISQLKYIINEYHNKR
Ga0335060_0143750_698_976F038234N/AMLTIENIESLKGTYVGHWKIHYVTKSKDNYLIKVVHNGSPFDMFNFSIGRVKTSNGGYLMYCQETGKALDSMPIEDIRDRDTFIRFLIDELI
Ga0335060_0143750_978_1295F007690N/AMLTIENINKLVNQKIWDGWEVNDIYKGDHNDTYIFELVKRKPLPMHNGLCTIMLERTGHIHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKENL

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