Scaffold Ga0335060_0013508

Overview

Basic Information

• Taxon OID: 3300034122
• Scaffold ID: Ga0335060_0013508
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5438
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034165	Metagenome / Metatranscriptome	175	Y
F056554	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335060_0013508_3733_4053	F034165	GGAG	MPTFTVSLGKDATLTGLANARSATVSNSASEVDVTKFGDTSRKYRKALIEQTIEVECVDSPGATIGGTFTVTGTQTGNATYVVTNISRSDPLDGISTFTVSGSRSA
Ga0335060_0013508_4075_4401	F056554	AGG	MAITLGKDQSDAPPFGGSGIISASFTQECDTIDISNRGNIGGTTGAPGRKAFKAGFVKKTWEIETHDVAGLITSLEAAGTAGSFSVMSVTENVSIDNAITYTVTAMEF