Scaffold Ga0335058_0166726

Overview

Basic Information

• Taxon OID: 3300034121
• Scaffold ID: Ga0335058_0166726
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1289
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042157	Metagenome	158	N
F068425	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335058_0166726_484_738	F042157	N/A	MNLKQKYRSPDNKQLKKIADYLIYVFLPFIQTSLALAESQGLITLKQAFWGGLVATFLLINTKFLTKFTTETPTRTDLIDGDGC
Ga0335058_0166726_751_1287	F068425	N/A	MKQQYQLITFAVLCLLLIIGLNHCAKEKPKPIPFDYKAEAELMKKQFGNEQAILLNQLENVNKRLQFAVNAKDSIRKRELSLTNTNIALLKKLRHNLPKECDTVFVLCDEIINVKDSSYAALFNAFQICDSVSVIKDSLITAYKAENVTDSTLLVISKQETKQQRKGKIAAWCVGGAMF