NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335058_0106644

Scaffold Ga0335058_0106644


Overview

Basic Information
Taxon OID3300034121 Open in IMG/M
Scaffold IDGa0335058_0106644 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1639
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035193Metagenome172N
F042160Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0335058_0106644_1180_1551F035193N/AMDGYPMPHLIGELSPVVHPKNWDLIRVPVRKVDDQYIVYVADGFHRIYTDDTLPDVLKSKFAMINANGEKFLPDSKILRLTLYTNTHAPELDEVGWRASATYYCLVVDRLTLESLKGGIQNDA
Ga0335058_0106644_233_1207F042160AGGAGMTYTFSRYFLDGFGTEEQLNELLHSDVLPLVRELQFKYGLKVMGKVMNVGYPQEDKDSYMMCHPNGLAVCKVWTTSLGGANNDQIEYCFRTPYYAKSRGSDQNDRETIRSTKLSSLMAVLKRQAAVRSKKDIMDNKVKQVRSGVHALRQSMGNSDKQNSFTPDEIHAMLATLLGESTNGLSVPLDLNKCKNTLDIYKEADKIRDIKREESKRFFKNPFYLIGIDDYKHLLIGKFKMTVLHSDTSKMEYEIIEDFKRVRTIEEYPELVPLMTMMKVSYETKEVRRLGTLNFPIMDKYDEGLDAVFFYGGQPTNYEHSWMATPCPT
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