Scaffold Ga0335058_0058665

Overview

Basic Information

• Taxon OID: 3300034121
• Scaffold ID: Ga0335058_0058665
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2245
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014956	Metagenome / Metatranscriptome	258	Y
F021732	Metagenome / Metatranscriptome	217	Y
F031483	Metagenome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335058_0058665_1578_1835	F021732	N/A	MNITKYTCKCTIDKKKGHFVHVTFSHGFGLYGQTSPHSPEDNMEIHGWTFEPADIDLELYPKINRYNLMPLVAENEMDWTILTNQ
Ga0335058_0058665_528_986	F031483	N/A	MNILKGKVKYTAGKVFEGQYGPSINAAITLDNGTDIRVYGKPDDAKLMALKKDDAVTIIHDGKSYKVAFDMITADEIPEKVQTPTEGANVQQAANVPPKNNGKMTLEEITEKATLMTSVYADIFHQLQASGLEPAQAQPAAATIFIQIGKYF
Ga0335058_0058665_961_1221	F014956	GGA	MINIQDFALNASLSICPSHIVEPLHLKKWWRQRGVGELEKYFYTGNKISYDQEIDWKAISDHKKSLWYDSQNFQINMGHEYSKRQG