Scaffold Ga0335058_0020456

Overview

Basic Information

• Taxon OID: 3300034121
• Scaffold ID: Ga0335058_0020456
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3941
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F042157	Metagenome	158	N
F049410	Metagenome	146	N
F068425	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335058_0020456_1775_1960	F049410	GGA	MTRNTRYTNGKEVITFSKIDFIAIGGRKIDHVYFRRKDKHDLILPLLEWNLKGKFEWEII
Ga0335058_0020456_1964_2218	F042157	N/A	MNLKQKYRSPDNKQLKKIADYLIYVLLPFIQTSLALAETQGLISLRQAFWGGLAATFLLINTKFLTKFTTEKPTRTAVINGDGC
Ga0335058_0020456_2_361	F041191	N/A	AKSEGVQKVIGFSRGWHHWNSIRLGIRKEENYCVLYFYAYIKGQRIIQRLGRYQIGELVKVRLHWGYYIECKANDGYAFRVAPKCSFPIGYQLNSYAEKDGTEGIEVPLNIEIKNLKIY
Ga0335058_0020456_2202_2795	F068425	N/A	MGMGAKTNNMKQHHQLITFAVLCLLLIIGLNHCAKEKPKPIPFDYKTEAELMKKQFGIEQAILLNQLEAVNRRLQTANNAKDSIRKRELSLTNTNIALMKKLRQTLPKECDTVFVLCDEIINVKDSSYAALFTAFQLCADGSTIKDSLITAYKAENITDSTLLVISKQETKQQRKGKVAAWCVGGAMFLVWLVVGLK