NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335058_0020456

Scaffold Ga0335058_0020456


Overview

Basic Information
Taxon OID3300034121 Open in IMG/M
Scaffold IDGa0335058_0020456 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3941
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041191Metagenome160Y
F042157Metagenome158N
F049410Metagenome146N
F068425Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0335058_0020456_1775_1960F049410GGAMTRNTRYTNGKEVITFSKIDFIAIGGRKIDHVYFRRKDKHDLILPLLEWNLKGKFEWEII
Ga0335058_0020456_1964_2218F042157N/AMNLKQKYRSPDNKQLKKIADYLIYVLLPFIQTSLALAETQGLISLRQAFWGGLAATFLLINTKFLTKFTTEKPTRTAVINGDGC
Ga0335058_0020456_2_361F041191N/AAKSEGVQKVIGFSRGWHHWNSIRLGIRKEENYCVLYFYAYIKGQRIIQRLGRYQIGELVKVRLHWGYYIECKANDGYAFRVAPKCSFPIGYQLNSYAEKDGTEGIEVPLNIEIKNLKIY
Ga0335058_0020456_2202_2795F068425N/AMGMGAKTNNMKQHHQLITFAVLCLLLIIGLNHCAKEKPKPIPFDYKTEAELMKKQFGIEQAILLNQLEAVNRRLQTANNAKDSIRKRELSLTNTNIALMKKLRQTLPKECDTVFVLCDEIINVKDSSYAALFTAFQLCADGSTIKDSLITAYKAENITDSTLLVISKQETKQQRKGKVAAWCVGGAMFLVWLVVGLK

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