Scaffold Ga0335058_0017047

Overview

Basic Information

• Taxon OID: 3300034121
• Scaffold ID: Ga0335058_0017047
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4345
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F042157	Metagenome	158	N
F049410	Metagenome	146	N
F062749	Metagenome	130	Y
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335058_0017047_1767_1940	F102493	N/A	MTTTLTLTLHFDYENDDRENNIKGGWVLTDITNGNTPVYLSPKLEQLLNEELDPENF
Ga0335058_0017047_1944_2141	F062749	N/A	MKTKLKLSLILWAAAGIFLSCWSVGFAMSGMFYGNGKVLTFSIALWASLTSAVCGAGFMQQWLKK
Ga0335058_0017047_2126_2554	F041191	AGG	MVKKMKLLYKPTNLSCEFIISDFAKSEGVQKVIGFSRGWHHWNSIRLGIRKEENYCVLYFYAYIKGQRIIQRIGRYAIGELVKVRLHWGYYIECKANNGYAFRVAPKCSFPIGYLLYPYAEKDGVEGIEVPIDIKIMNLKIS
Ga0335058_0017047_3392_3577	F049410	GGA	MTRNTRYTNGNEIITFVKIDFIVIGGRKIDHVYFRRKDKHDLIMPLVEWNLKGKFEWTII
Ga0335058_0017047_3960_4214	F042157	N/A	MNLKQKYRSPDNRQLKKIADYLIYVLLPFIQTSLALAETQGLITLKQAFWGGLAATFLLINTKFLTKFTTEKPTKTAVIDGDGC