NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335058_0015420

Scaffold Ga0335058_0015420


Overview

Basic Information
Taxon OID3300034121 Open in IMG/M
Scaffold IDGa0335058_0015420 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4584
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014956Metagenome / Metatranscriptome258Y
F021732Metagenome / Metatranscriptome217Y
F025505Metagenome / Metatranscriptome201N
F041648Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0335058_0015420_1843_2106F021732N/AMNITKYTCKCTLDKKLGHFVHVIFSHGFGLYGQTSPHSPEDNMEIHGWTFEPHDIDLELYPQITRYNLMPLVAENEIDWVILTNQSL
Ga0335058_0015420_2119_2469F041648N/AMENIESTFTNNALTRYYEERIVYLEGENERLRNESRADFWIVLDFWIYSQRMIQAYVSWHNEAKHNHYLDCIKTMLETLEANETRVLDTAINKLRIEVIACCKIAIIKCEQITAAR
Ga0335058_0015420_2466_2726F014956N/AMINIQDFALNASLSICPNHIVEPKHLQKWWREKGVGEIEKYFWTGNKIKYDQEIDWKAISDHKKQMWYDSQNFQIQMGNEYSKRQG
Ga0335058_0015420_972_1706F025505N/AMNNLPMIATRVEEKIQDVQLVIQNRELRIFKTGTKEAIPKIAQALSHLLPVYGIEPKPEHLMEVTDFISNYKLLAVDEIKLAFEKFAKQELDINDHKLYGKVDLHAIGRILTAYITWRQKIYFAMDSDIQAKKEEEDRMKRLGKVAEEYDKDFDNKLKNFQKPLDEIPVFWYDECVKRGYINEWKEGEKEALWLEAQEMAKQEKPDSDNMIDRKNHMRKIEEGNMPRARALAYKLAVWRKVLLR
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