Scaffold Ga0335058_0011318

Overview

Basic Information

• Taxon OID: 3300034121
• Scaffold ID: Ga0335058_0011318
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5436
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014956	Metagenome / Metatranscriptome	258	Y
F021732	Metagenome / Metatranscriptome	217	Y
F031483	Metagenome	182	N
F041648	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335058_0011318_3723_4181	F031483	AGCAG	MNILKGKVKYTAGKVFEGQYGPSINAVITLDNGTEARVYGKADDTKLMALKKDDAVTVIHDGKSYKVAFDMVTANEIPEKVQTPTEGANVQQAANVPPKSNGKLTHDELWAKLNLMTTMYAEIFNQLKAEGLEPAQAQPAAATIFIQIGKYF
Ga0335058_0011318_4162_4416	F014956	N/A	MITIQEFALKASLSVCPDYVVEPFRLKKWWREQGARELEKYFFAGYKVDYDQEIDWKAISDHKKQMWYDSQNFQIQAGNEYSKR
Ga0335058_0011318_4413_4763	F041648	N/A	MENIESTFTNNALTRYYEERIVYLEGENERLRNEARADFLTVLDFWIYAQRTIETYVMFHKESNHDHYIEMIKTILQNMESKEEKALDTGINKLRIEIIARCKIAIVKCEKITEAR
Ga0335058_0011318_4777_5040	F021732	N/A	MNITKYTCKCTLDKKLGHFVHVTFSHGFGLYGQTLPHSPEDNMEIHGWTFDPENIDLELYPKITRYNLMPLVAENEMDWVILNNQSL