NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335058_0002608

Scaffold Ga0335058_0002608


Overview

Basic Information
Taxon OID3300034121 Open in IMG/M
Scaffold IDGa0335058_0002608 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12224
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (11.76%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001775Metagenome / Metatranscriptome636Y
F093880Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0335058_0002608_1409_1960F001775N/AMMEFSTDNQKIKIALISFLGGVIAAFIFLPKPEEETVYKFTTKVESDTIYTQVWDTVYVPKMWIKSQVLRDTVLVNYQPKISLFKASIPSEYGSTHLSGEVLGEVLKMTATNDFKIPVVTNTITETKTETIIKKPKGIYLGASMNSMLDPGAKVSYLDNKYLFSYQFQPLEKLHTLSVSKKIF
Ga0335058_0002608_7268_7576F093880GGTGGMKAEDLQKMNDLNRDIWGMIVQAQQTKNWALMEVNLKRLYSLQKKYINLINIMDYELKGTTLMLQDEIRVRNQFEKQWFKDVSTRSGSYQDMKENIDKHFPT
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