Scaffold Ga0335058_0001392

Overview

Basic Information

• Taxon OID: 3300034121
• Scaffold ID: Ga0335058_0001392
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17511
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001097	Metagenome / Metatranscriptome	780	Y
F002487	Metagenome / Metatranscriptome	554	Y
F014143	Metagenome / Metatranscriptome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335058_0001392_1078_1296	F001097	GGAG	MNFEWPTNDSSRIGTLQKLRSPRMDTQVQQKEIDDWLKQSIALVAGSVRGLGTNQRKVRYFAFERQNDEVTK
Ga0335058_0001392_3246_3401	F014143	GGAG	MNTHYLTHVRKIFATYDAPPQVIRSYQKQWVKSVRQLGDKWLVAKPIERIQ
Ga0335058_0001392_3398_3577	F002487	N/A	MTKLTRQDAIQDLQGTYCCYCTEPKTSGSCCGENHFVPFGDLYEEDKEAMIEEYLSKGN