NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335058_0000873

Scaffold Ga0335058_0000873


Overview

Basic Information
Taxon OID3300034121 Open in IMG/M
Scaffold IDGa0335058_0000873 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22694
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (13.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054854Metagenome139N
F062750Metagenome130N
F095480Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0335058_0000873_13276_13479F095480N/AMIKTKIQETLDTIGQIDFDIRWVQQKIAKQNYNSFKKSIEHQEKIQMMVLERLKERYNKQVEKLKIY
Ga0335058_0000873_15975_16622F062750AGGAGMNKEVAIRDITILVLGFLTIMLLFKGCNHRKRSTSLVIDLQNYSDKVREYEDANGNLIEYNAAMQLLVDQKSDEVLAMEKRLKLKDTEVLIKYKSIFKYDTIKHVFREQLPCTAFIDSFSIDSTFFKFDAVITEKNFSLYNIQVPNEQTFIIAKKKSSWLKEDSLSVIVENSNPNIKGESLRAYTFKPSPKWYNSYKFKGALFVAGVIGGVMLAK
Ga0335058_0000873_7818_8192F054854GAGMQTLSRSKIAEERETDSLNDLFKEEIMIDLSFDLALCEMMAKKSAGAKKNNWENMALRIQSYKDYIDKIHSKAKREYLINDMKPSDIITLLDKNKRLERLNLSLMKQNENLKTQIDNYVAKFGL

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