Scaffold Ga0335058_0000462

Overview

Basic Information

• Taxon OID: 3300034121
• Scaffold ID: Ga0335058_0000462
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31720
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004112	Metagenome / Metatranscriptome	452	Y
F011226	Metagenome / Metatranscriptome	293	Y
F011844	Metagenome / Metatranscriptome	286	Y
F093875	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335058_0000462_11327_11665	F093875	N/A	MIGETNLRPIKRGDTYIIPFEFYADECESTPINVSTYIFKLMAKNSSGVTQFTWNNADFVSVATNKRTVTLSNVTTATYNIGEFSYELQVDVGSGVYTWMIGYIEVQDQITS
Ga0335058_0000462_14171_14467	F011226	N/A	MAKQIQPVNIWINGESKEAKYFSVTCINDNYENSATNYWQLYDAMVDEEGNEKMGMQVSAGNLTIDGQDYINWGDQPAMAINEWIYNWSASKLNLVII
Ga0335058_0000462_5086_5517	F011844	N/A	MGQILGSVQNIEVDVAGGSSYKNLVCLASSSVNTTLDTATDQTNCGVLTSVGEPSVSLDFDAVCETAPSVAQISYEDLLAASINKTMVSVRVQNPTVIGASIGTVYYHQFSAYVTSLTLTQATADFIKFSGSLSSTGTIDITA
Ga0335058_0000462_5960_6157	F004112	N/A	MLDGYQNKKIDNYKLTRLLMFTMVRLMGDPKTAPKSPNALWELPGDDSENGVTDEDIKELFKRLG