Scaffold Ga0335058_0000365

Overview

Basic Information

• Taxon OID: 3300034121
• Scaffold ID: Ga0335058_0000365
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36177
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (71.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004362	Metagenome / Metatranscriptome	442	Y
F006502	Metagenome / Metatranscriptome	371	Y
F022814	Metagenome	212	Y
F057002	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335058_0000365_18324_18758	F057002	N/A	MTTKQFNQELHDLYDPPAREAVTKWVKMKWGLECRENPNVYGVDLLVYRADKLVGYVEVEVRSWDYCHYPTIHCHQRKSKLFQQDRPVLFFALTQDLVHAYWAKAEVIEGCPLIEVKNSEVPAGELFFDVPVKHFKYVDLTQLF
Ga0335058_0000365_25753_26106	F022814	N/A	MKLTPAVLRNLYASLACCYPFTKWKMPLPEEINFVVTADPEIMGTYLYDTGEDYEHTITISSARCGHYYTCLTTLTHEAIHCSFHRQKGDRWLHHGKAFRDRCKLVATELGLDPLEL
Ga0335058_0000365_27163_27567	F004362	AGGA	MESRLQNWAWYVSYGVIGPQVETTCRSFEKNYIPELGNLYAEPEPHYEPDHVDGDLIEQTIKNLPQNLRQALKLRYVSHPYASINQLANAARTTVHRIEADLLNAKKRLQHELDRKAKSNHYKSLLTVQDKQID
Ga0335058_0000365_27694_28056	F006502	GAG	MNPEKTTIMIGLLGDKPKMGKKEEGGLLAEDKSSCPLSTMDADINKGNMRKAVLTADYGSKKDGEGKCKACEYFNTDMADCGVPKGKGHCDIFDFVCDSENGCMAWEAIGEEEMEMEYEE